The race to induce broad beta coronavirus immunity to prevent spillover

Aug. 10, 2021

Three epidemic or pandemic coronaviruses — SARS-CoV, MERS-CoV, and SARS-CoV-2 — have spilled over from animals to cause deadly illness in humans in the past 20 years. Virus researchers are determined to discover a means to broadly safeguard people from the continuing threat of emerging coronaviruses, according to a news release from the University of Washington School of Medicine.

Clues for creating such an overarching countermeasure might come from a rare type of human antibody that can neutralize several different coronaviruses. These antibodies have been detected in some people who have recovered from COVID-19.

A paper in Science describes research on five such human monoclonal antibodies that can cross-react with a number of beta-coronaviruses. These antibodies target a structure, called stem helix, in the spike protein of these viruses. The spike protein is critical to the virus’ ability to overtake host cells.

Researchers are from the University of Washington School of Medicine in Seattle and Humabs Biomed SA,  a subsidiary of Vir Biotechnology in Switzerland.

The stem helix in the spike protein has remained conserved during the evolution of certain coronaviruses. That means it is much less prone to genetic changes and is similar in various coronaviruses. These include those originating in bats that have become dangerous pathogens in people, and another subgenus that causes a serious human lung disease transmitted by dromedary camels, as well as a few other subgenera that cause simple common cold symptoms.

The researchers explain in their paper that they were interested in exploring antibodies that target highly conserved regions of the spike protein machinery that enable coronaviruses to fuse with the membrane of host cells.

To find these sorts of antibodies, the researchers examined certain memory B cells from COVID-19 convalescent donors. Memory B cells are white blood cells that recognize and respond to pathogens that have tried to attack the body during a previous encounter.

Out of five promising antibodies that they isolated, the scientists decided to concentrate on one designated S2P6.  Molecular structure analysis and functional studies showed that this human monoclonal antibody had impressive breadth:  it was able to neutralize three different subgenera of beta-coronaviruses.  The scientists observed that it did so by inhibiting the virus’ ability to fuse with cell membranes.

The researchers went on to test if the S2P6 stem helix antibody could protect against SARS-CoV-2 by administering it to hamsters 24 hours before exposure. They found that this antibody reduced the viral load of SARS-CoV-2 by inhibiting entry of the virus and by enhancing additional anti-viral and virus-clearing cellular immune responses.

Studies of the plasma from pre-pandemic human samples, as well as from COVID-vaccinated and COVID-recovered individuals were also analyzed to see how frequently the stem-helix targeting antibodies appeared. They highest frequencies occurred in people who had recovered from COVID-19, then were later vaccinated.

Overall, however, the data from this study shows that, while it does occur, it is relatively rare for SARS-CoV-2 to elicit plasma stem-helix antibody responses. The researchers hope that additional studies might reveal whether this is the case for antibodies that target other parts of the coronavirus fusion machinery or only for those that target the stem helix.

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