No U.S. commercial labs fully meet guidance for NIPS

April 5, 2019

An analysis of the reports and materials provided by commercial laboratories offering noninvasive prenatal screening (NIPS) for genetic disorders finds that none of them fully meet the recommendations published by the American College of Medical Genetics and Genomics (ACMG). The report from a team of specialists in medical genetics is being published in the journal Genetics in Medicine, the official peer-reviewed journal of the ACMG.

“It’s been more than two years since the ACMG published its recommendations about NIPS, and we could not find a single commercial lab in the U.S. that adhered to all of the recommendations,” says Brian Skotko, MD, MPP, of the Division of Medical Genetics at MassGeneral Hospital for Children, corresponding author of the paper. The ACMG position statement includes guidance to laboratories on the test reports used by clinicians and expectant parents.

“Incomplete or inaccurate reporting can lead to confusion and improper counseling,” Skotko says.  “The ACMG was clear that laboratories should not offer screening when some of their recommendations were not met, so I think our findings will be concerning to clinicians and expectant parents trying to identify quality NIPS reporting in today’s marketplace.”

NIPS testing analyzes a blood sample from an expectant mother for DNA fragments derived from the placenta, which can reveal genetic or chromosomal conditions in a fetus. The most commonly screened-for disorders include Down syndrome, caused by an extra copy of chromosome 21; other “trisomies” involving chromosomes 13 or 18; and extra or missing copies of the X or Y sex chromosomes. NIPS has the highest detection rate and lowest false positive rate of any screening test used for these conditions.  However, NIPS is a screening test, and false positive and negative results are known to occur at rates that can vary depending on the specific condition being screened.

Among its recommendations, the ACMG specified five statistics that should be reported for each screened-for condition: (a) detection rate – the percentage of fetuses with a condition that will accurately be diagnosed by the test; (b) specificity – the percentage of fetuses without a condition that will receive a negative result; (c) positive predictive value (PPV) – the percentage of fetuses with positive test results that will actually have the condition; (d) negative predictive value (NPV) – the percentage of fetuses for which a negative test result will be accurate, and (e) fetal fraction – the percentage of cell-free DNA in the mother’s bloodstream that originated from the placenta.

The ACMG recommendations also limited the number of conditions for which screening should be offered, specified that test results be provided in ways that help parents and providers understand the findings and make decisions, and called upon labs to direct parents and providers to resources providing additional education and support when test results are positive.

The team’s consensus-based analysis of test results and patient education materials provided by 10 commercial laboratories offering NIPS found considerable inconsistencies and inadequacies in reporting the full range of ACMG-reported statistics. Overall, while all of them met some of the ACMG recommendations, none met them all.

Mass General has the full article